jvarkit

JVARKIT

Author : Pierre Lindenbaum Phd. Institut du Thorax. Nantes. France. Version : f23a30912 Compilation : 20240201171004 Github : https://github.com/lindenb/jvarkit Issues : https://github.com/lindenb/jvarkit/issues

Usage

  java -jar jvarkit.jar [options]

or

  java -jar jvarkit.jar <command name> (other arguments)

Options

Compilation

Requirements / Dependencies

Download and Compile

$ git clone "https://github.com/lindenb/jvarkit.git"
$ cd jvarkit
$ ./gradlew jvarkit

The java jar file will be installed in the dist directory.

Contribute

License

The project is licensed under the MIT license.

Citing

Should you cite jvarkit ? https://github.com/mr-c/shouldacite/blob/master/should-I-cite-this-software.md

The current reference is:

http://dx.doi.org/10.6084/m9.figshare.1425030

Lindenbaum, Pierre (2015): JVarkit: java-based utilities for Bioinformatics. figshare. http://dx.doi.org/10.6084/m9.figshare.1425030