jvarkit

BatchIGVPictures

Last commit

Takes IGV pictures in batch. Save as HTML+png image

Usage

Usage: java -jar dist/batchigvpictures.jar  [options] Files
Usage: batchigvpictures [options] Files
  Options:
    -h, --help
      print help and exit
    --helpFormat
      What kind of help. One of [usage,markdown,xml].
    --version
      print version and exit

Keywords

Compilation

Requirements / Dependencies

Download and Compile

$ git clone "https://github.com/lindenb/jvarkit.git"
$ cd jvarkit
$ ./gradlew batchigvpictures

The java jar file will be installed in the dist directory.

Creation Date

20140731

Source code

https://github.com/lindenb/jvarkit/tree/master/src/main/java/com/github/lindenb/jvarkit/tools/batchpicts/BatchIGVPictures.java

Contribute

License

The project is licensed under the MIT license.

Citing

Should you cite batchigvpictures ? https://github.com/mr-c/shouldacite/blob/master/should-I-cite-this-software.md

The current reference is:

http://dx.doi.org/10.6084/m9.figshare.1425030

Lindenbaum, Pierre (2015): JVarkit: java-based utilities for Bioinformatics. figshare. http://dx.doi.org/10.6084/m9.figshare.1425030

Motivation

Takes IGV pictures in batch. Save as HTML+png images

Screenshot

screenshot

History

2019: removed open office support