jvarkit

Biostar77828

Divide the human genome among X cores, taking into account gaps

Usage

This program is now part of the main jvarkit tool. See jvarkit for compiling.

Usage: java -jar dist/jvarkit.jar biostar77828  [options] Files

Usage: biostar77828 [options] Files
  Options:
    -h, --help
      print help and exit
    --helpFormat
      What kind of help. One of [usage,markdown,xml].
    -iter, --iter
      number of iterations
      Default: 1000000
    -maxc, --maxc
      max core
      Default: 30
    -minc, --minc
      min core
      Default: 20
    -o, --output
      Output file. Optional . Default: stdout
    --version
      print version and exit

Keywords

• workflow
• reference
• parallel

See also in Biostars

• https://www.biostars.org/p/77828
• https://www.biostars.org/p/369434

Source code

https://github.com/lindenb/jvarkit/tree/master/src/main/java/com/github/lindenb/jvarkit/tools/biostar/Biostar77828.java

Unit Tests

https://github.com/lindenb/jvarkit/tree/master/src/test/java/com/github/lindenb/jvarkit/tools/biostar/Biostar77828Test.java

Contribute

• Issue Tracker: http://github.com/lindenb/jvarkit/issues
• Source Code: http://github.com/lindenb/jvarkit

License

The project is licensed under the MIT license.

Citing

Should you cite biostar77828 ? https://github.com/mr-c/shouldacite/blob/master/should-I-cite-this-software.md

The current reference is:

http://dx.doi.org/10.6084/m9.figshare.1425030

Lindenbaum, Pierre (2015): JVarkit: java-based utilities for Bioinformatics. figshare. http://dx.doi.org/10.6084/m9.figshare.1425030

input

input is a bed file

see also

• https://gist.github.com/lindenb/6130880/

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