jvarkit

SwingVcfJexlFilter

Filter VCF using Java Swing UI and JEXL/Javascript expression

Usage

This program is now part of the main jvarkit tool. See jvarkit for compiling.

Usage: java -jar dist/jvarkit.jar swingvcfjexl  [options] Files

Usage: swingvcfjexl [options] Files
  Options:
    -h, --help
      print help and exit
    --helpFormat
      What kind of help. One of [usage,markdown,xml].
    --version
      print version and exit

Keywords

• vcf
• visualization
• swing
• jexl
• javascript

Creation Date

20220413

Source code

https://github.com/lindenb/jvarkit/tree/master/src/main/java/com/github/lindenb/jvarkit/tools/vcfviewgui/SwingVcfJexlFilter.java

Contribute

• Issue Tracker: http://github.com/lindenb/jvarkit/issues
• Source Code: http://github.com/lindenb/jvarkit

License

The project is licensed under the MIT license.

Citing

Should you cite swingvcfjexl ? https://github.com/mr-c/shouldacite/blob/master/should-I-cite-this-software.md

The current reference is:

http://dx.doi.org/10.6084/m9.figshare.1425030

Lindenbaum, Pierre (2015): JVarkit: java-based utilities for Bioinformatics. figshare. http://dx.doi.org/10.6084/m9.figshare.1425030

Example

java -jar dist/swingvcfjexl.jar src/test/resources/rotavirus_rf.vcf.gz

Screenshot

https://twitter.com/yokofakun/status/1514287386410336259

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