‘one INFO with N values’ to ‘N variants with one INFO’
Usage: vcfmulti2oneinfo [options] Files
Options:
-h, --help
print help and exit
--helpFormat
What kind of help. One of [usage,markdown,xml].
* -i, --info
The INFO tag
-o, --output
Output file. Optional . Default: stdout
--outputbcf
Output bcf (for streams)
Default: false
--vcfcreateindex
VCF, create tribble or tabix Index when writing a VCF/BCF to a file.
Default: false
--vcfmd5
VCF, create MD5 checksum when writing a VCF/BCF to a file.
Default: false
--version
print version and exit
${PATH}
. Setting JAVA_HOME is not enough : (e.g: https://github.com/lindenb/jvarkit/issues/23 )$ git clone "https://github.com/lindenb/jvarkit.git"
$ cd jvarkit
$ ./gradlew vcfmulti2oneinfo
The java jar file will be installed in the dist
directory.
The project is licensed under the MIT license.
Should you cite vcfmulti2oneinfo ? https://github.com/mr-c/shouldacite/blob/master/should-I-cite-this-software.md
The current reference is:
http://dx.doi.org/10.6084/m9.figshare.1425030
Lindenbaum, Pierre (2015): JVarkit: java-based utilities for Bioinformatics. figshare. http://dx.doi.org/10.6084/m9.figshare.1425030